BtaEX6025487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114647800-114651505:-
Coord C1 exon
chr5:114651344-114651505
Coord A exon
chr5:114649384-114649581
Coord C2 exon
chr5:114647800-114647952
Length
198 bp
Sequences
Splice sites
3' ss Seq
ACGGGCCACGGTGCCCACAGACC
3' ss Score
6.24
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
TGCACTGCTCTCCCGGCCACCACTACAACACCACCACCCACCGCTGCATCCGCTGCCCCGTCGGCACCTACCAGCCCGAGTTCGGCCAGAACCACTGCATCACCTGTCCGGGCAACACCAGCACGGACTTCGACGGCTCCACCAACGTCACACACTGCAAAA
Seq A exon
ACCAGCACTGTGGCGGCGAGCTCGGCGACTACACAGGCTACATCGAGTCTCCCAACTACCCTGGCGACTACCCGGCCAACGCCGAGTGCGTGTGGCACATCTCGCCGCCCCCCAAGCGCAGGATCCTCGTCGTGGTCCCCGAGATCTTTCTGCCCATCGAGGACGAGTGTGGCGACGTCCTGGTCATGAGGAAGAGCG
Seq C2 exon
CCTCACCCACATCCATCACCACCTATGAGACCTGCCAGACCTACGAGAGGCCCATCGCCTTCACCTCCCGCTCCCGGAAGCTCTGGATCCAGTTCAAATCCAATGAAGGCAACAGCGGCAAAGGGTTCCAAGTGCCCTATGTCACCTACGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACTACAACACCACCAC
R:
TGAACTGGATCCAGAGCTTCC
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]