GgaEX0020906 @ galGal4
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68718008-68723801:-
Coord C1 exon
chr1:68723640-68723801
Coord A exon
chr1:68722058-68722255
Coord C2 exon
chr1:68718008-68718160
Length
198 bp
Sequences
Splice sites
3' ss Seq
TAATTTATGTTCCTGCATAGACC
3' ss Score
7.08
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTCATTGCTCTCCTGGACACTACTACAACTCCACAACGCACAGATGTATCCGATGCCCTGTAGGAACTTACCAGCCTGAGTTTGGTCAAAACTACTGCATCACCTGCCCTGGGAACACAAGTACGGATTTCGATGGCTCCACTAATGTTACGCACTGTAAAA
Seq A exon
ACCAGCACTGTGGAGGAGAACTTGGTGATTATACTGGCTATATCGAATCACCCAACTATCCTGGAGACTACCCAGCTAACGTTGAATGCATTTGGAATATAAATCCACCCCCAAAGAGGAGAATACTCATTGTTGTGCCTGAGATATTTCTCCCAATAGAAGATGAATGTGGTGATGTTTTAGTAATGAGAAAAAGTG
Seq C2 exon
CTTCTCCTACTTCAATTACTACATATGAAACGTGTCAGACTTATGAGAGACCTATTGCATTTACTTCAAGATCAAGGAAGCTATGGATTCAGTTCAAGTCAAATGAAGGCAACAGTGGCAAAGGATTTCAAGTCCCTTATGTGACTTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'25-33,'25-32,26-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCACAGATGTATCCGATGC
R:
ATCCTTTGCCACTGTTGCCTT
Band lengths:
253-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]