RnoEX0078726 @ rn6
Exon Skipping
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124504470-124507953:-
Coord C1 exon
chr7:124507792-124507953
Coord A exon
chr7:124505921-124506118
Coord C2 exon
chr7:124504470-124504622
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTTGGCCATGGTACTCACAGACC
3' ss Score
5.34
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
TACACTGCTCTCCCGGCCACCACTACAATACCACTACCCACCGGTGCATCCGATGTCCTGTGGGTACCTATCAACCCGAGTTTGGCCAGAACCATTGCATCTCCTGTCCGGGCAACACCAGCACCGATTTTGATGGTTCCACCAATGTCACACACTGCAAAA
Seq A exon
ACCAGCACTGCGGTGGCGAGCTTGGTGACTACACAGGCTATATCGAGTCCCCCAACTACCCTGGAGACTACCCAGCCAATGCGGAGTGTGTGTGGCACATTGCGCCTCCCCCCAAGCGCAGGATCCTCATTGTGGTCCCTGAGATCTTCCTGCCCATCGAGGATGAGTGTGGCGATGTTCTGGTCATGAGGAAGAGCG
Seq C2 exon
CCTCGCCCACGTCAGTCACCACCTATGAGACGTGCCAGACCTACGAGCGGCCTATCGCCTTCACCTCCCGCTCCCGCAAACTCTGGATCCAGTTCAAATCCAACGAGGCCAACAGTGGCAAAGGGTTTCAAGTGCCCTACGTCACCTATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATCAACCCGAGTTTGGCC
R:
AGGTGACGTAGGGCACTTGAA
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]