BtaEX6026082 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008428 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr4:7528879-7531725:-
Coord C1 exon
chr4:7531611-7531725
Coord A exon
chr4:7529221-7529430
Coord C2 exon
chr4:7528879-7529025
Length
210 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCTTCCTTCCTTCAGGTC
3' ss Score
13.48
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CACGGGATGGGCGTCCCCTCCATCGCTATCATGCTGCATGAGCTCATCAAGCTGCTGTACCATGCTCGCTGCTCCGGCGTCACCCTCATCCGCATTGGCACTTCCGGTGGGATAG
Seq A exon
GTCTGGAGCCCGGTTCAGTGGTCATCACCCGGCAGGCGGTGGACCCGTGCTTTAAGCCGGAGTTCGAGCAGATTGTCCTTGGGAAGCGAGAGGTCCGGAACACGGACCTGGACGAGCAGCTGGTGCAGGAGCTGGCGCGCTGCTCCGCGGAGCTCGGCGAGTTCCCCACAGTCGTGGGCAACACCATGTGCACCCTGGACTTCTATGAGG
Seq C2 exon
GGCAAGGCCGCCTGGACGGGGCGCTCTGCTCCTACACTGAAAAGGACAAGCAGGAGTACCTGCGGGCAGCCTACGCGGCCGGCATCCGCAACATTGAGATGGAGGCGTCGGTCTTTGCTGCCATGTGCAACGCCTGTGGCCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008428-'10-8,'10-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCCTCCATCGCTATCAT
R:
GCCACAGGCGTTGCACAT
Band lengths:
244-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]