GgaEX6020672 @ galGal3
Exon Skipping
Gene
ENSGALG00000013073 | UPP1
Description
NA
Coordinates
chr2:82226862-82229396:+
Coord C1 exon
chr2:82226862-82226976
Coord A exon
chr2:82227742-82227951
Coord C2 exon
chr2:82229250-82229396
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTTCCATTGCAGGTC
3' ss Score
12.78
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CACGGTATGGGCATTCCTTCTATTTCAATCATGTTGCACGAGCTGATCAAACTGTTGTATCATGCCAAGTGTTCCAACATAACCATTATTCGCATTGGCACCTCGGGTGGAATAG
Seq A exon
GTCTGGAACCAGGCTCAGTGGTTATAACCAGGCAGTCTGTAGATGCCACCTTCAAACCTCAGTTTGAACAGGTTGTTCTGGGAAAAACTATAATTCGCAGCACAAATCTAGATGAAGAGCTGGCTAAAGAGCTGCTACAGTGCAGTAAAGAAATCAATCAGTTCAATACTGTCATTGGAAACACTATGTGCACTTTGGATTTTTATGAAG
Seq C2 exon
GACAGGGCAGGTTGGATGGTGCAATCTGCTTGTATAATGAAGAAGAAAAACTGCAATATTTGAAGGAAGCTTACGATTCCGGTGTCAGAAACATTGAGATGGAATCTTCTGTCTTTGCTGCAATGTGCAATCTCAGTGGTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGTATGGGCATTCCTTCT
R:
CTGACACCACTGAGATTGCACA
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]