DreEX6040089 @ danRer10
Exon Skipping
Gene
ENSDARG00000040869 | upp1
Description
uridine phosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-050306-2]
Coordinates
chr16:16297280-16302842:-
Coord C1 exon
chr16:16302728-16302842
Coord A exon
chr16:16302371-16302580
Coord C2 exon
chr16:16297280-16297426
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTTCATGTGTCAGGTT
3' ss Score
8.35
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
CATGGCATGGGCATTCCTTCAATCTCTATAATGCTACATGAGCTCATCAAGCTGCTGTATCATGCTCGCTGCACTGATGTCACCGTAGTGCGCATTGGAACTTCAGGTGGAATAG
Seq A exon
GTTTAAAGCCAGGGACTGTAGTGGTTACCAAACAATCAGTGGATTCTCTGTTCCAGCCTCACCTTGAGCAGACTATTCTGGGTAAACCAGTGGTCAGGAGCACAGAACTCGATAAGGAACTTGCCGAGGAGCTGCTTCAGTGTGGAAAAGAGCTTGGAGAGTTTGAGATCATCATTGGAAACACAATGTGCACTCTTGACTTCTATGAAG
Seq C2 exon
GTCAAGCTCGGCTGGATGGTGCCTTCTGCTCATACAGTGAAGAAGATAAACAGAACTATCTTGCTGAAGCCTATGCTGCTGGGGTTCGCAATATTGAGATGGAATCATCTGTGTTTGCTGCCATGTGCAAACTGAGCAATCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040869-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(21.2=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCATGGGCATTCCTTCA
R:
CGAAGATTGCTCAGTTTGCACA
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]