RnoEX0096785 @ rn6
Exon Skipping
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89330956-89333063:+
Coord C1 exon
chr14:89330956-89331070
Coord A exon
chr14:89332477-89332686
Coord C2 exon
chr14:89332917-89333063
Length
210 bp
Sequences
Splice sites
3' ss Seq
GATACTCGGATCTTCCTCAGGTC
3' ss Score
6.35
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CATGGCATGGGCATCCCTTCCATTGGGATCATGTTGCATGAGCTCATCAAGATGCTGTACCATGCCAGGTGCTCCAACATCACCATCATCCGCATTGGCACTTCAGGAGGGATAG
Seq A exon
GTCTGGAGCCTGGCTCTGTCGTCATCACTCAGCAGGCAGTGGATGAGTGCTTCAAACCAGAGTTTGAGCAGATTGTGCTGGGAAAGCGGGTGACTCGAAACACCAGCCTGGACGCGCAGCTGGTACAGGAGTTGATGCAGTGCTCCTCAGACCTGAACGAGTTCCCCACTGTTGTGGGTAACACCATGTGCACCTTGGACTTCTATGAGG
Seq C2 exon
GGCAAGGCCGCCTGGATGGTGCCCTCTGCTCCTACACAGAGAAGGACAAACAGGCCTATCTGCGTGCAGCCCATGCCGCAGGTGTCCGAAATATCGAGATGGAATCTTCAGTGTTTGCCACCATGTGCAGTGCCTGTGGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCATGGGCATCCCTTC
R:
ACTGCACATGGTGGCAAACA
Band lengths:
246-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]