DmeEX6004427 @ dm6
Exon Skipping
Gene
FBgn0031489 | CG17224
Description
This gene is referred to in FlyBase by the symbol DmelCG17224 (FBgn0031489). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 2L:3016441..3018308. Its molecular function is described by: uridine phosphorylase activity. It is involved in the biological process described with: nucleotide catabolic process; nucleoside metabolic process. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages, at stages throughout the pupal period.
Coordinates
chr2L:3016926-3017725:-
Coord C1 exon
chr2L:3017384-3017725
Coord A exon
chr2L:3017179-3017320
Coord C2 exon
chr2L:3016926-3017119
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACAACTAATAAACATTTTAGGCT
3' ss Score
3.85
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTCATCTGCATGGGTGGAACGGGCTCCAGAATGCGGCAGTTAGCCCTTTACCTAAGAGATATCCTGGTAGTGTCGGAGTCCGGCGATCCGGTGGATTTGTGCGAGCGTGGCAACCGATATGCCATGTACAAGGTGGGTCCGGTACTGTGCGTGAGCCACGGCGTTGGATCCTCCTCCTTCAGTGTCGTGCTCCACGAGCTGATCAAGCTCCTCAAATATGCGCGGTGCCAGGACCCCGTCCTGCTTCGGATTGGCACCTGCGGAGGACTTGGCGTCCCTCCCGGCACAGTGGTGGCCAGCAAAAATGCCTTCAATGGTCTGCTGCGCAACGAGCATGAGATC
Seq A exon
GCTATTCTCGGACAGCGAGTGGTGCGTCCGGCTCAGTTTTCCGAGGACGTGATCAGGGATTTACTTGCATTCGGTGTCGACGCCAACGACGGATTTCAGACCATAAGTGCCAACACAATGGGAACAGATTGCTTTTACGAAG
Seq C2 exon
GTCAAGGTCGCACCGATGGAGCCATATGCGAGTACTCGGAGAAGGATAAGATGGAGTTCTTGCAGAAGTGCCACGATCTGGGAATCCGGAACATCGAGATGGAGGCCAGCATGTTCGCCTCCGTCACCCAAAAAGTGGGGGTCAAAGCAGGCGATGTATGCGTGACCCTGATCGATCGCCTAAAGGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0031489-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(45.0=100)
A:
PF0104815=PNP_UDP_1=FE(18.7=100)
C2:
PF0104815=PNP_UDP_1=FE(25.5=100)
Main Inclusion Isoform:
FBpp0077355
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0077356, FBpp0290039, FBpp0304019
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTCCTTCAGTGTCGTG
R:
AGATCGTGGCACTTCTGCAAG
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)