BtaEX6009684 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012801 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:38339773-38349610:-
Coord C1 exon
chr2:38349496-38349610
Coord A exon
chr2:38342022-38342231
Coord C2 exon
chr2:38339773-38339919
Length
210 bp
Sequences
Splice sites
3' ss Seq
TATTTATTCCCACACTGCAGGGA
3' ss Score
6.07
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CATGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATTAAATTACTATACCATGCCCGATGCTCTGACGTTATCATTATCAGAATCGGCACATCAGGGGGAATAG
Seq A exon
GGATTGCACCTGGATCTGTTGTAATAACAGATGAAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTAATCTTGGACAACATTGTCACCAGAAGTACTGAACTTGACAAAGAACTGGCTGAGGAAATATTCAACTGTAGCAAAGAAATTTCCAACTTCCCAACCCTCATTGGACATACGATGTGTACTTATGATTTTTATGAAG
Seq C2 exon
GCCAGGGTCGACTCGATGGAGCACTGTGCTCTTTTTCCAGAGAAAAGGGTTTAGATTACTTGAAGAGAGCATATAATGCCGGCATCAGAAATATCGAAATGGAATCTACAGTGTTTGCAGCCATGTGTAGACTTTGTGGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012801-'3-10,'3-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCATGGGCATCCCC
R:
TTTAGACCACAAAGTCTACACATGGC
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]