DreEX6035662 @ danRer10
Exon Skipping
Gene
ENSDARG00000036833 | upp2
Description
uridine phosphorylase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-830]
Coordinates
chr9:16169406-16170459:-
Coord C1 exon
chr9:16170345-16170459
Coord A exon
chr9:16169960-16170169
Coord C2 exon
chr9:16169406-16169552
Length
210 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTTGACTACACAGGCT
3' ss Score
7.86
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CATGGCATGGGTGTTCCCTCCATCTCCATCATGCTGCATGAGCTCATTAAATTGCTCTATCATGCTCGCTGTCGTGATGTCATCATCTTTCGCATTGGCACATCAGGTGGAATTG
Seq A exon
GCTTGGCTGCAGGTACAATAGTGATCACAGATAAAGCTGTGGACTCATTCTTCAGGCCACAGTTTGAGCAGGTGGTTTTGGGAAAGGTAATCACCAGGAGCACAGAGCTTGATGTGGATATAGCCCAAGAACTACTGCAGTATTCATCTGAGCTTACAGATATGCCCACTGTAATTGCAAACACAATGTGCACGCATGATTTCTACGAAG
Seq C2 exon
GTCAGGGGCGCCTGGATGGAGCCCTGTGCTCATTTTCTACTGAAGAAAAATTTGAATATCTGCGGAAAGCAAGTGAAGCAGGTGTCAGAAACATTGAGATGGAGTCCAGTGTCTTTGCTGCCATGTGTCATGTCTGCAATCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036833-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCCCTCCATCTCCATC
R:
TTTAAGATTGCAGACATGACACATGG
Band lengths:
252-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]