MmuEX6101421 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58774116-58791242:+
Coord C1 exon
chr2:58774116-58774230
Coord A exon
chr2:58777805-58778014
Coord C2 exon
chr2:58790029-58791242
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTCCTCATTGCAGGGA
3' ss Score
10.69
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CACGGGATGGGCATCCCCTCCATTTCCATTATGCTCCACGAACTCATCAAATTACTCCACCATGCACACTGCTGTGATGTTACCATCATCAGAATTGGAACGTCAGGGGGAATTG
Seq A exon
GGATTGCACCAGGCTCCGTTGTAATAACAGATACAGCTGTAGACTCCTTCTTCAAGCCTCGATTTGAGCAGGTCATCTTGGATAACGTGGTCACCCGAAGCACTGAGCTTGACAAAGAACTGGCTAATGATCTGTTCAACTGTAGCAGAGAAATCCCCAATGTTCCAACCCTCATCGGACACACGATGTGTACCTATGACTTTTATGAAG
Seq C2 exon
CTGCTGTGGTCTGTGTGACACTTCTTGACAGACTCGAGAGTGACCAAATCAATTTGTCCCATGATGTCCTGGTGGAGTACCAGCAACGGCCACAGCTTCTAATCTCAAATTTCATCAAAAAACAGCTTGGACTTTGTGACCAGATGTCATAACTCCGAATCCCGCCACCCTCCTGAGAGTTGCTACACAGAGCTGCAACGATGGAGCCATGTGTTGTTCATAACATTCTTATGTAATTCCCATCCTTGGGCTAAAATCATAAAAGATTTTTATGAAATCTTTTATCTTAAAGTTCAATTTATTGTAAGAGAATTTAATACTCATGCGAAATTCAAATCCCATTTTGGAACGAGTTAACGAAAGCAGTCTAATAATTAATATTTTAAACTCATGAAATGTGACATTTGGAGTTTCACATGCAGCATTAATTAAGCTTACATCAAAATCAGCCATTTGTAGATGGTTACCAGTTGCTTGCTGAAGCAGATCCAGAAGTGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839_MULTIEX2-5/7=4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=PD(15.5=76.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCCCTCCATTTCCATT
R:
ATCGTTGCAGCTCTGTGTAGC
Band lengths:
308-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types