GgaEX1062318 @ galGal3
Exon Skipping
Gene
ENSGALG00000012554 | UPP2
Description
NA
Coordinates
chr7:37941867-37944179:+
Coord C1 exon
chr7:37941867-37941981
Coord A exon
chr7:37942469-37942678
Coord C2 exon
chr7:37944033-37944179
Length
210 bp
Sequences
Splice sites
3' ss Seq
CTCAGCCTCTGCTTTCCCAGGGG
3' ss Score
7.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CACGGAATGGGCATCCCTTCTGTGTCCATCATGCTTCACGAGCTGATCAAACTGCTGCACCACGCCAAATGCCGAGACGTCACCATTATACGCATTGGTACTTCTGGAGGCTTAG
Seq A exon
GGGTGCAGGCCGGCTCCGTGGTGATCACAGACAGGGCGGTGGACGCCCGCTTCCAGCCACGGTTCGAGCAGGTGGTGCTGGGCGATGTGGTGGTGCGGGGCACCGACCTGGACGGGGGCCTTGTGGAGGAGCTGCTGGCTTGCAGTGAGGCCATTCCTGACTTCCCCACTCTCGTCGGGCACACCATGTGCACCTACGACTTCTATGAAG
Seq C2 exon
GTCAAGGGAGGTTAGATGGAGCTCTGTGCTCTTTCTCCAATGAAAAGAAGTTGCAGTACTTAAAGCGAGCTCATGATGCCGGCGTGAGAAATATTGAAATGGAGTCAACGGCGTTCGCTGCGCTGTGCGGGCTGTGCGGGCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012554-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.1=100)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGGCATCCCTTCTGTG
R:
CGAACGCCGTTGACTCCATTT
Band lengths:
229-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]