RnoEX0096786 @ rn6
Exon Skipping
Gene
ENSRNOG00000005341 | Upp2
Description
uridine phosphorylase 2 [Source:RGD Symbol;Acc:1308188]
Coordinates
chr3:44826662-44833052:+
Coord C1 exon
chr3:44826662-44826776
Coord A exon
chr3:44830693-44830902
Coord C2 exon
chr3:44832912-44833052
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTCCACATTGCAGGGA
3' ss Score
8.54
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CACGGGATGGGCATCCCCTCCATTTCCATTATGCTCCACGAACTCATCAAATTACTCCACCATGCACGCTGCTGCGATGTTACCATCATCAGAATTGGAACATCGGGGGGAATTG
Seq A exon
GGATTGCTCCGGGGTCTGTTGTAATAACAGATACAGCTGTAGACTCCTTCTTCAAGCCTCGGTTTGAACAGGTCATCTTGGATAACGTGGTCACCCGAAGCACCGAGCTTGACAAAGAACTGGCTACTGATTTGTTCAACTGTAGCAGAGAGATCCCCAACTTTCTAACCCTCATCGGACACACGATGTGTACCTATGACTTTTACGAAG
Seq C2 exon
GCCGCTTAGATGGAGCGCTATGTTGTTTCTCGAGAGAGAAAAAGCTGGACTATTTGAAGAGAGCGTACAAAGCTGGAGTCAGGAACATTGAAATGGAATCGACGGTGTTCGCCGCCATGTGTGGACTATGTGGCTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005341_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(15.3=100)
A:
PF0104815=PNP_UDP_1=FE(28.1=100)
C2:
PF0104815=PNP_UDP_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCCCTCCATTTCCATT
R:
TCAAGCCACATAGTCCACACA
Band lengths:
244-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]