MmuEX6083991 @ mm10
Exon Skipping
Gene
ENSMUSG00000020407 | Upp1
Description
uridine phosphorylase 1 [Source:MGI Symbol;Acc:MGI:1097668]
Coordinates
chr11:9133234-9135310:+
Coord C1 exon
chr11:9133234-9133348
Coord A exon
chr11:9134722-9134931
Coord C2 exon
chr11:9135164-9135310
Length
210 bp
Sequences
Splice sites
3' ss Seq
GATCTGTGCATCTTCCTCAGGTC
3' ss Score
9.01
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CATGGCATGGGCATTCCTTCCATCGGCATCATGTTGCACGAGCTCATCAAGATGCTGTACCATGCCAGGTGCTCCAACATCACCATCATCCGCATTGGCACTTCAGGCGGGATAG
Seq A exon
GTCTGGAGCCTGGCTCTGTTGTCATCACGCAGCAGGCAGTGAATGAGTGCTTCAAGCCGGAGTTTGAGCAGATTGTCCTGGGAAAACGGGTGATTCGCAACACCAACCTGGACGCGCAGCTGGTTCAGGAGTTGGTGCAGTGCTCCTCAGACCTGAATGAGTTCCCCATGGTTGTGGGCAACACCATGTGCACCTTGGACTTCTATGAGG
Seq C2 exon
GGCAAGGCCGTCTGGATGGCGCCCTCTGCTCCTACACAGAGAAAGACAAACAGTCTTATCTGCGTGCAGCCCATGCCGCGGGTGTCCGAAATATCGAGATGGAATCTTCGGTGTTTGCCACCATGTGCAGTGCCTGTGGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020407-'21-20,'21-19,27-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PD(32.1=86.7)
A:
PF0104815=PNP_UDP_1=FE(27.9=100)
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGGCATTCCTTCCATC
R:
CACTGCACATGGTGGCAAACA
Band lengths:
244-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types