BtaEX6026310 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014069 | PDK4
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 4 (PDK4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101883]
Coordinates
chr4:12763580-12766337:-
Coord C1 exon
chr4:12766196-12766337
Coord A exon
chr4:12764507-12764578
Coord C2 exon
chr4:12763580-12763764
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACACACCTATTGCTTTGTAGGTA
3' ss Score
8.25
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTCAGAAAACGCATGTGAAAGAACCTCGTTTGCATTTTTGCGACAAGAGTTGCCTGTGAGGCTGGCCAATATCCTGAAGGAAATTTATATACTCCCTGACCGACTAGTAAATACCTCTTCAGTGCAATTAGTTAAGAGCTG
Seq A exon
GTATATGCAGAGCCTGATGGAGTTGGTGGAATTCCATGAGAAAAGCCCAGAGGACCAAAAGGCATTATCAGA
Seq C2 exon
TTTTGTAGATACTCTCATCAAAGTTCGAAATAGACACCATGATGTAATTCCTACAATGGCACAAGGAATCCTAGAATATAAAGATGCCTGTACAGTTGACCCAGTCACCAATCAAAATCTTCAGTATTTCCTGGATCGATTTTACATGAATCGTATTTCTACCCGGATGCTGATGAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014069-'3-4,'3-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.7=100),PF0160215=Adaptin_N=PU(25.6=45.8)
A:
PF104364=BCDHK_Adom3=FE(14.6=100),PF0160215=Adaptin_N=FE(27.9=100)
C2:
PF104364=BCDHK_Adom3=FE(37.8=100),PF0160215=Adaptin_N=PD(45.3=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAAGAGTTGCCTGTGAGG
R:
AGGATTCCTTGTGCCATTGTAGG
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]