HsaEX6009090 @ hg38
Exon Skipping
Gene
ENSG00000004799 | PDK4
Description
pyruvate dehydrogenase kinase 4 [Source:HGNC Symbol;Acc:HGNC:8812]
Coordinates
chr7:95592760-95595164:-
Coord C1 exon
chr7:95595023-95595164
Coord A exon
chr7:95593699-95593770
Coord C2 exon
chr7:95592760-95592944
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCATACCTGTTTCTTTACAGGTA
3' ss Score
10.41
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GTTCAGAAAATGCATGTGAAAGAACTTCTTTTGCATTTTTGCGACAAGAATTGCCTGTGAGACTCGCCAACATTCTGAAGGAAATTGATATCCTCCCGACCCAATTAGTAAATACCTCTTCAGTGCAATTGGTTAAAAGCTG
Seq A exon
GTATATACAGAGCCTGATGGATTTGGTGGAATTCCATGAGAAAAGCCCAGATGACCAGAAAGCATTATCAGA
Seq C2 exon
CTTTGTAGATACACTCATCAAAGTTCGAAATAGACACCATAATGTAGTCCCTACAATGGCACAAGGAATCATAGAGTATAAAGATGCCTGTACAGTTGACCCAGTCACCAATCAAAATCTTCAATATTTCTTGGATCGATTTTACATGAACCGTATTTCTACTCGGATGCTGATGAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004799-'4-4,'4-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.7=100)
A:
PF104364=BCDHK_Adom3=FE(14.6=100)
C2:
PF104364=BCDHK_Adom3=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACAAGAATTGCCTGTGA
R:
TTCCTTGTGCCATTGTAGGGA
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains