DreEX6074064 @ danRer10
Exon Skipping
Gene
ENSDARG00000054848 | pdk4
Description
pyruvate dehydrogenase kinase, isozyme 4 [Source:ZFIN;Acc:ZDB-GENE-060503-754]
Coordinates
chr19:41616024-41626028:-
Coord C1 exon
chr19:41625847-41626028
Coord A exon
chr19:41617521-41617592
Coord C2 exon
chr19:41616024-41616208
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCATTTGCTTTCAAACACAGGTA
3' ss Score
8
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TCAAGAGTGAAATTCTTACGTAGTCCTGTTTTGCTCTCAGGATCTGCCAATGCGTGTGAGAAGACCTCCTTCATGTTTCTGAGGCAGGAGCTTCCCGTCCGGCTAGCGAACATCATGAAGGAGATCGACTTTCTTCCGGACAAACTGCTCGGCACTCCTTCACTGAAGCTGCTGCAGAGCTG
Seq A exon
GTACGCTCAGAGTCTAATGGAGCTGGTGGACTTTTTGGAGAAAGACCCTGATGATAAAAAAATCCTGACTAA
Seq C2 exon
ATTCACAGAAACACTGATCAATGTCAGGAACAGGCATAATAATGTGGTCCCCACCATGGCACAGGGGGTGCTGGAGTACAAGGAGGCCTTTGGCGTGGATCCAGTGACCAATCAGAACGTCCAGTATTTTCTGGACCGCTTCTACATGAGCCGAATCTCCACACGCATGTTGATGAATCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054848-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PU(25.2=97.3)
A:
PF104364=BCDHK_Adom3=FE(14.9=100)
C2:
PF104364=BCDHK_Adom3=FE(38.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTAGCGAACATCATGAA
R:
GCCAAAGGCCTCCTTGTACTC
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]