MmuEX6002843 @ mm10
Exon Skipping
Gene
ENSMUSG00000019577 | Pdk4
Description
pyruvate dehydrogenase kinase, isoenzyme 4 [Source:MGI Symbol;Acc:MGI:1351481]
Coordinates
chr6:5491830-5495031:-
Coord C1 exon
chr6:5494890-5495031
Coord A exon
chr6:5492706-5492777
Coord C2 exon
chr6:5491830-5492014
Length
72 bp
Sequences
Splice sites
3' ss Seq
CAAAACGTCTGTCTTCACAGGTA
3' ss Score
8.71
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTCAGAAAATGCCTGTGAAAGAACGTCCTTTGCTTTTCTGCGGCAAGAGCTGCCCGTCCGCCTGGCCAATATCCTGAAGGAGATTGACATCCTGCCTGACCGCTTAGTGAACACTCCTTCGGTGCAGCTGGTGAAGAGCTG
Seq A exon
GTATATCCAGAGCCTGATGGATTTGGTGGAGTTCCATGAGAAGAGCCCAGAAGACCAGAAAGCCCTGTCAGA
Seq C2 exon
GTTTGTAGACACGCTGGTCAAAGTTCGAAACAGACATCATAATGTGGTCCCTACAATGGCTCAAGGCATCCTGGAGTATAAAGACACCTGCACAGTGGACCCCGTTACCAATCAAAATCTTCAGTATTTTTTAGACCGGTTTTACATGAACCGCATTTCTACTCGGATGCTCATGAATCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019577-'5-2,'5-1,9-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.7=100)
A:
PF104364=BCDHK_Adom3=PU(18.0=94.7)
C2:
PF104364=BCDHK_Adom3=FE(37.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGACATCCTGCCTGACCG
R:
TGATTGGTAACGGGGTCCACT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types