RnoEX0064577 @ rn6
Exon Skipping
Gene
ENSRNOG00000009565 | Pdk4
Description
pyruvate dehydrogenase kinase 4 [Source:RGD Symbol;Acc:69061]
Coordinates
chr4:30553221-30555623:-
Coord C1 exon
chr4:30555482-30555623
Coord A exon
chr4:30554124-30554195
Coord C2 exon
chr4:30553221-30553405
Length
72 bp
Sequences
Splice sites
3' ss Seq
CAAAACTTCTCCCTTTCCAGGTA
3' ss Score
10.26
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTTCAGAAAATGCCTGTGAGAGAACTTCTTTTTCTTTTCTTCGGCAAGAATTGCCCGTCAGACTTGCCAACATCCTGAAGGAGATTGACATCCTCCCTGAACGCTTAGTGAACACCCCTTCCGTCCAGCTGGTGAAGAGCTG
Seq A exon
GTACATCCAGAGCCTGATGGATTTAGTGGAGTTCCACGAAAAGAGCCCAGAAGACCAGAAAGCTCTATCAGA
Seq C2 exon
CTTTGTAGACACGCTGGTCAAAGTTCGAAACAGACATCATAATGTGGTCCCTACGATGGCACAAGGGATCCTGGAGTACAAAGACAACTGCACCGTTGACCCCGTTACCAATCAAAATCTTCAGTATTTTTTGGACCGGTTTTATATGAACCGCATTTCTACTCGGATGCTCATGAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009565-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.7=100),PF0160215=Adaptin_N=PU(29.7=56.2)
A:
PF104364=BCDHK_Adom3=FE(14.6=100),PF0160215=Adaptin_N=FE(26.4=100)
C2:
PF104364=BCDHK_Adom3=FE(37.8=100),PF0160215=Adaptin_N=PD(42.9=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTGCCCGTCAGACTTGC
R:
AGGATCCCTTGTGCCATCGTA
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]