GgaEX1042842 @ galGal3
Exon Skipping
Gene
ENSGALG00000009700 | PDK4
Description
NA
Coordinates
chr2:23872259-23874036:-
Coord C1 exon
chr2:23873895-23874036
Coord A exon
chr2:23873012-23873083
Coord C2 exon
chr2:23872259-23872443
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGTGTTCTCAATAGGTA
3' ss Score
11.91
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
GCTCGACTAATGGGTGTGAAAGGACTTCCTTTGCGTTCCTGCGACAAGAGCTCCCCGTGAGGTTTGCAAACATACTGAGAGAAATCGAGCTCCTTCCTGATAAATTGCTAAGCACCCCTTCAGTGCAGTTAGTGAAAAGCTG
Seq A exon
GTACATCCAAAGTCTAATGGAGCTGGTTGAGTTCCATCAGAAAAGCCCAGATGACCAAAAAGTCTTATCTGA
Seq C2 exon
ATTTATAGATACATTAATCAGAGTTCGAAACAGACATCACGATGTAGTCCCTACAATGGCACAAGGAGTAATTGAATACAAAGATATGTTTAAAGTAGATCCTGTCACCAATCAAAACATTCAATACTTCTTGGATCGCTTTTACATGAGCCGCATTTCCACCCGGATGCTGATGAACCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.0=100)
A:
PF104364=BCDHK_Adom3=FE(14.3=100)
C2:
PF104364=BCDHK_Adom3=FE(36.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCAGTGCAGTTAGTGA
R:
TGCGGCTCATGTAAAAGCGAT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]