BtaEX6026548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003709 | ITGB8
Description
Bos taurus integrin, beta 8 (ITGB8), mRNA. [Source:RefSeq mRNA;Acc:NM_001192875]
Coordinates
chr4:29211666-29216280:+
Coord C1 exon
chr4:29211666-29211772
Coord A exon
chr4:29215360-29215523
Coord C2 exon
chr4:29215620-29216280
Length
164 bp
Sequences
Splice sites
3' ss Seq
TATTATTTGCTTCTTTACAGAAT
3' ss Score
9.66
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAATTGTGTGCAATGCCTTCACCCTCACAATCTGTCTCAAGCTATACTTGATCGGTGTAAAACTTCATGTGCTCTCAAAGAACAGCATTATGTGGACCAAACATCAG
Seq A exon
AATGCCTCTCTAGTCCAAGCTACTTGAGAATATTTTTCATCATTTTCATAGTCACATTCTTGATTGGGTTGCTTAAAGTCCTGATCATTAGACAGGTGATACTACAATGGAATAATAATAAAATTAAGTCCTCGGCAGATTACAGGGTGTCAGCCTCAAAAAAG
Seq C2 exon
GACAAGTTGATTCTGCAAAGTGTTTGCACAAGAGCAGTAACCTACCGACGTGAAAAACCTGAAGAAATAAAAATGGACATTAGCAAATTAAATGCTCATGAAACTTTCAGGTGCAACTTCTAAAATGATAAAAAAAGAAAGTACCTTATGGGAAACTGGATTTTAAATAATTGCTCCTAAAATTTACTATTTTAGAAGTCACAGGAAGAGACAAACTTGCTAGATCATGCCAGTTGCTGGTTGTCTACTCGAATGAAGACTGACAAGCATCCTCATCATCATGTGACTCACACTGCTGCTGAATTTTTCAGAGAAAAATGTGTCTTACTACTGTTTGATACTAGTGTCATTGTAGCACTTTACTGTAATATATAACTTATTTAGATCAGCATAGAATGTAGATTATCTGAAGAGCACTGACTACACTTTACAGGTACCCACCATTTGTACACTTCCCAGAGAGACAATGCTGTGAGATAGTTTTGGCATTGTGTCACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003709-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTATGTGGACCAAACA
R:
AGCAAGTTTGTCTCTTCCTGTGA
Band lengths:
247-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]