GgaEX0016259 @ galGal4
Exon Skipping
Gene
ENSGALG00000010875 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]
Coordinates
chr2:30154589-30162967:+
Coord C1 exon
chr2:30154589-30154692
Coord A exon
chr2:30155787-30155950
Coord C2 exon
chr2:30162842-30162967
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCCTTTCATTGCAGAAT
3' ss Score
11.31
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAATTGTGTTCAGTGCCACCATTCTAACAATGCATCTCAAGCTAAACTTGACCAGTGTAAAACCTCATGTGCTTACCTATTGCATTACGTTGACCAAACTTCAG
Seq A exon
AATGTTTCTCTGGACGAAGCTACTTTAGAGTGTTTTCCATAATCTTTATAGTTACATTTCTGATTGGGTTGCTTGTTGTACTTATCATCAGGCAGATAATTCTGCAGGGAAATAGCAATAAAGTTAAATCTTCAGCTGATTACAGAGTCTCTGCGACAAAGAAG
Seq C2 exon
ATACCATTGACCAGAAAAAGGCTTGCTGCTCAAGCTCTCCAAAGAGGAATGAAACCTAAGTTACAGCCTCTAAAGCCGGAGGAGGAAAGAGATCCTTCTTTCAGCCACTTTTTTGACACCAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAGTGCCACCATTCT
R:
AAGTGGCTGAAAGAAGGATCTCT
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]