GgaINT0090900 @ galGal4
Intron Retention
Gene
ENSGALG00000010875 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]
Coordinates
chr2:30155787-30156294:+
Coord C1 exon
chr2:30155787-30155950
Coord A exon
chr2:30155951-30156043
Coord C2 exon
chr2:30156044-30156294
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATTGTATCTTCTCCTTCAAGGAA
3' ss Score
7.94
Exon sequences
Seq C1 exon
AATGTTTCTCTGGACGAAGCTACTTTAGAGTGTTTTCCATAATCTTTATAGTTACATTTCTGATTGGGTTGCTTGTTGTACTTATCATCAGGCAGATAATTCTGCAGGGAAATAGCAATAAAGTTAAATCTTCAGCTGATTACAGAGTCTCTGCGACAAAGAAG
Seq A exon
GTAATTGATTTCAGAGCCATCATATTCAGTAATTTATTTCTTGCACATAAAAGTTAGCTAATTGTTGATAAAAATTGTATCTTCTCCTTCAAG
Seq C2 exon
GAAAAGATGTTTTTGCCTACTGTTTGTACAAGAACAGTAACATACAGACGTGACAAACCAGAGGAAATAAATATCGACATCAGCAAGTTGCGATTAAATGAAACTTTCAAGTGTGAATTCTGAAGACAGTGTGTTTTCTGCAAATGTCTATTTCCATCATTCTCTACTTTTTAGAAGTTACCACTCTGTCAGAATCTCGTCTGTTGCTGTTTGTGTCATGCATTTTGTTGGATACTGTAACAACGTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875:ENSGALT00000017677:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATTGGGTTGCTTGTTGT
R:
CCTCTGGTTTGTCACGTCTGT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]