RnoINT0076449 @ rn6
Intron Retention
Gene
ENSRNOG00000006569 | Itgb8
Description
integrin subunit beta 8 [Source:RGD Symbol;Acc:1311374]
Coordinates
chr6:147094295-147094669:-
Coord C1 exon
chr6:147094506-147094669
Coord A exon
chr6:147094418-147094505
Coord C2 exon
chr6:147094295-147094417
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
AATATTTCTTCTCCATCAAGGAT
3' ss Score
6.36
Exon sequences
Seq C1 exon
AGTGTTTATCTGGCCCAAGCTATCTGCGAATATTTTTCATCATATTCATAGTGACATTCTTGATTGGGTTGCTTAAAGTTCTTATCATTAGACAAGTGATACTACAGTGGAATAGTAATAAAATAAAGTCCTCATCAGATTACAGAGTGTCTGCTTCCAAAAAG
Seq A exon
GTTGGTGAACTCAGAGGATAGCCATACGTTATTGTTCAGTTCTAATGCTCAGCTCCTTCACTAATCCCAATATTTCTTCTCCATCAAG
Seq C2 exon
GATAAACTGATTCTGCAAAGTGTTTGCACGAGAGCTGTAACCTACCGACGAGAAAAGCCTGAGGAAATAAAAATGGATATCAGCAAACTAAACGCCCAGGAGGCTTTCAGGTGCAACTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006569:ENSRNOT00000066545:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACATTCTTGATTGGGTTGCT
R:
AGGCTTTTCTCGTCGGTAGGT
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]