BtaINT0078268 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003709 | ITGB8
Description
Bos taurus integrin, beta 8 (ITGB8), mRNA. [Source:RefSeq mRNA;Acc:NM_001192875]
Coordinates
chr4:29215360-29216280:+
Coord C1 exon
chr4:29215360-29215523
Coord A exon
chr4:29215524-29215619
Coord C2 exon
chr4:29215620-29216280
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AATATTTCTTCCTTATCAAGGAC
3' ss Score
6.78
Exon sequences
Seq C1 exon
AATGCCTCTCTAGTCCAAGCTACTTGAGAATATTTTTCATCATTTTCATAGTCACATTCTTGATTGGGTTGCTTAAAGTCCTGATCATTAGACAGGTGATACTACAATGGAATAATAATAAAATTAAGTCCTCGGCAGATTACAGGGTGTCAGCCTCAAAAAAG
Seq A exon
GTCAGTGAATTCTAAAAATGAATTACTATCAGTGTGTTATTGTCTACTTTCAATATTTAGGCTCTTAATTAATGATAATATTTCTTCCTTATCAAG
Seq C2 exon
GACAAGTTGATTCTGCAAAGTGTTTGCACAAGAGCAGTAACCTACCGACGTGAAAAACCTGAAGAAATAAAAATGGACATTAGCAAATTAAATGCTCATGAAACTTTCAGGTGCAACTTCTAAAATGATAAAAAAAGAAAGTACCTTATGGGAAACTGGATTTTAAATAATTGCTCCTAAAATTTACTATTTTAGAAGTCACAGGAAGAGACAAACTTGCTAGATCATGCCAGTTGCTGGTTGTCTACTCGAATGAAGACTGACAAGCATCCTCATCATCATGTGACTCACACTGCTGCTGAATTTTTCAGAGAAAAATGTGTCTTACTACTGTTTGATACTAGTGTCATTGTAGCACTTTACTGTAATATATAACTTATTTAGATCAGCATAGAATGTAGATTATCTGAAGAGCACTGACTACACTTTACAGGTACCCACCATTTGTACACTTCCCAGAGAGACAATGCTGTGAGATAGTTTTGGCATTGTGTCACTACAAGGCTACCGTAATCCCTGCACCAAACATGCAGACAAACGAATAATGCAGTTATACTAATGTTGCCAAGCACTTCAACAACTGGCAGCAGTGAACAGATAAGACCAGACAGATGAATAAATGATTAGTGTTTCATTCATTCAAGAGATAAACAGATAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003709:ENSBTAT00000004833:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACATTCTTGATTGGGTTGCT
R:
TCACGTCGGTAGGTTACTGCT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]