MmuINT0084228 @ mm9
Intron Retention
Gene
ENSMUSG00000025321 | Itgb8
Description
integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
Coordinates
chr12:120401276-120401973:-
Coord C1 exon
chr12:120401810-120401973
Coord A exon
chr12:120401713-120401809
Coord C2 exon
chr12:120401276-120401712
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
AATATTTCTTCTCCATCAAGGAT
3' ss Score
6.36
Exon sequences
Seq C1 exon
AATGTTTATCTGGCCCAAGCTATCTGCGAATATTTTTCATCATATTCATAGTCACATTCTTGATCGGGTTGCTTAAAGTTCTTATCATTAGACAAGTGATACTACAATGGAATAATAATAAAATAAAGTCCTCATCAGATTATAGAATGTCTGCTTCTAAAAAG
Seq A exon
GTTGGTGAACTCGGAGGACAATTATATTAATTATATGTGACTGTGCACTTCTAACACTCAGCTCTGTTACTAATCCTAATATTTCTTCTCCATCAAG
Seq C2 exon
GATAAACTGATTCTGCAAAGTGTTTGCACGAGAGCTGTAACCTACCGACGAGAAAAGCCTGAGGAAATAAAAATGGATATCAGCAAACTAAATGCTCAGGAGGCCTTCAGGTGCAACTTCTAAATAAGATTAACAAACAAACAAAAACTGTTGGAAGCTGGATGGTTTTACAATTTATTCTAGCAAGTATAATATAAAGTCACAGGAGAAGACAAATTATATTGAAGAGTGTGCCATGAAGACTGGCAAGTGTCTTCACAACCATATGACTCACTCAGCTGCTGAAGTTTTCAGTGAACTATGTGTCTTACTACTGTTGGAGACTAGTGTTGTAGCACTTTATTGTAATATATAACTTATTTAGATCAGCGTAGAATGTAGATCATCTGGGAAAGCACTGATTACACTTTACAGGTACCTGTCAGCCCTGAGCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025321-Itgb8:NM_177290:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTCTTGATCGGGTTGCT
R:
AGGCTTTTCTCGTCGGTAGGT
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: