DreEX0040202 @ danRer10
Exon Skipping
Gene
ENSDARG00000028222 | itgb8
Description
integrin, beta 8 [Source:ZFIN;Acc:ZDB-GENE-071213-3]
Coordinates
chr19:2469446-2475977:+
Coord C1 exon
chr19:2469446-2469556
Coord A exon
chr19:2474704-2474864
Coord C2 exon
chr19:2475404-2475977
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTGTGTTAAACAGTGT
3' ss Score
8.09
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGCTGGTCCGGGGGAAATACTGCCTGTATCCCAGCACTGATAAGTGTCAGTATCGCTTTCTCATGGAATTGGCATCAGATGGAGCTCAGCTGCACATTAGTCGACATCCTG
Seq A exon
TGTGTGTTTGGAGCCGGCGGTACTTTAAGACCTTTCTCAGCGTCTTCCTGCTGACCGTCACACTGGGCATCGGGATGTTGGCCGGCGTCCGGCAGCTGCTGAGAGTTACAGGCCGCTCCTGCATCTCCAAGACTGAGCCGCAGTTCGAGCACACACACAAG
Seq C2 exon
GACTCGTCTTACGTCCCAACGAGCAGTGAGAAGACCATAACATACAGGAGGGACCGTCTGCCCAATCACCCGGTGGAGATGCACACACACACACCCACACTTACACACAAGATGCCCATCGGGGACGCCTGGTAGTGCAACAAACACTACCTGAAAGAAAACACAATCCTAAAGCACTTACTTCACCACAGCGGTACCTTCAGTGGCTTTACTGAGGCTTCTTTTCAAGTCTAATTTATTATCTTCAGTGGCATTAAGAGCGGCAGAGAGAGGGAGATGAAGATTCCTGTTAAACTCGTGTGGTTTCTGGGCCAATTTTCTGCGCTTCTCCAGTCGTCTCTCTGTTTTTTACGCTTATAGTTTGTTCGTTAGCATCTATTTTTTTTTCTATTTTTTTTTTTTTTTTAGATATCAGTACACTACAGACTCTGGCTGTGTTCAGAATAGCATACTAGCACACTGCTTGTACACTGAAAAGAACGATTCATTAGATTCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028222-'14-14,'14-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000136138fB3345
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGGAAATACTGCCTGTA
R:
TTTGTTGCACTACCAGGCGTC
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]