MmuEX6083492 @ mm10
Exon Skipping
Gene
ENSMUSG00000025321 | Itgb8
Description
integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
Coordinates
chr12:119158022-119166861:-
Coord C1 exon
chr12:119166755-119166861
Coord A exon
chr12:119163337-119163500
Coord C2 exon
chr12:119158022-119163239
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACTTGTCTCCTTTCTTGCAGAAT
3' ss Score
11.63
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAATTGTCTGCAGTGCCTTCACCCTCACAATCTGTCTCAGGCTGCCCTTGATCAGTGTAAATCCTCCTGTGCTGTCATGGAACAGCATCGCATGGACCAAACATCAG
Seq A exon
AATGTTTATCTGGCCCAAGCTATCTGCGAATATTTTTCATCATATTCATAGTCACATTCTTGATCGGGTTGCTTAAAGTTCTTATCATTAGACAAGTGATACTACAATGGAATAATAATAAAATAAAGTCCTCATCAGATTATAGAATGTCTGCTTCTAAAAAG
Seq C2 exon
GATAAACTGATTCTGCAAAGTGTTTGCACGAGAGCTGTAACCTACCGACGAGAAAAGCCTGAGGAAATAAAAATGGATATCAGCAAACTAAATGCTCAGGAGGCCTTCAGGTGCAACTTCTAAATAAGATTAACAAACAAACAAAAACTGTTGGAAGCTGGATGGTTTTACAATTTATTCTAGCAAGTATAATATAAAGTCACAGGAGAAGACAAATTATATTGAAGAGTGTGCCATGAAGACTGGCAAGTGTCTTCACAACCATATGACTCACTCAGCTGCTGAAGTTTTCAGTGAACTATGTGTCTTACTACTGTTGGAGACTAGTGTTGTAGCACTTTATTGTAATATATAACTTATTTAGATCAGCGTAGAATGTAGATCATCTGGGAAAGCACTGATTACACTTTACAGGTACCTGTCAGCCCTGAGCTTCACAGACAAACACGAGGCTATGGAGCAGGTTGCAGGGTGTCACCACCACAGACTGGTGATCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025321-'26-24,'26-23,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATCTGTCTCAGGCTGCC
R:
ACCATCCAGCTTCCAACAGTT
Band lengths:
248-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types