HsaEX0032489 @ hg19
Exon Skipping
Gene
ENSG00000105855 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:6163]
Coordinates
chr7:20445685-20449953:+
Coord C1 exon
chr7:20445685-20445794
Coord A exon
chr7:20449238-20449401
Coord C2 exon
chr7:20449498-20449953
Length
164 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTGCTTCATTACAGAAT
3' ss Score
8.26
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAATTGTATGCAATGCCTTCACCCTCACAATTTGTCTCAGGCTATACTTGATCAGTGCAAAACCTCATGTGCTCTCATGGAACAACAGCATTATGTCGACCAAACTTCAG
Seq A exon
AATGTTTCTCCAGCCCAAGCTACTTGAGAATATTTTTCATCATTTTCATAGTTACATTCTTGATTGGGTTGCTTAAAGTCCTGATCATTAGACAGGTGATACTACAATGGAATAGTAATAAAATTAAGTCCTCATCAGATTACAGAGTGTCAGCCTCAAAAAAG
Seq C2 exon
GATAAGTTGATTCTGCAAAGTGTTTGCACAAGAGCAGTCACCTACCGACGTGAGAAGCCTGAAGAAATAAAAATGGATATCAGCAAATTAAATGCTCATGAAACTTTCAGGTGCAACTTCTAAAAAAAGATTTTTAAACACTTAATGGGAAACTGGAATTGTTAATAATTGCTCCTAAAGATTATAATTTTAAAAGTCACAGGAGGAGACAAATTGCTCACGGTCATGCCAGTTGCTGGTTGTACACTCGAACGAAGACTGACAAGTATCCTCATCATGATGTGACTCACATAGCTGCTGACTTTTTCAGAGAAAAATGTGTCTTACTACTGTTTGAGACTAGTGTCGTTGTAGCACTTTACTGTAATATATAACTTATTTAGATCAGCATAGAATGTAGATCCTCTGAAGAGCACTGATTACACTTTACAGGTACCTGTTATCCCTACGCTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105855-'20-21,'20-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTATGTCGACCAAACT
R:
TGGCATGACCGTGAGCAATTT
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)