RnoEX0045261 @ rn6
Exon Skipping
Gene
ENSRNOG00000006569 | Itgb8
Description
integrin subunit beta 8 [Source:RGD Symbol;Acc:1311374]
Coordinates
chr6:147094097-147097895:-
Coord C1 exon
chr6:147097789-147097895
Coord A exon
chr6:147094506-147094669
Coord C2 exon
chr6:147094097-147094417
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTTCCTTTCTTGCAGAGT
3' ss Score
11.29
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAATTGTCTACAGTGCCTTCACCCTCACAATCTGTCTCAAGCTGTTCTTGATCAGTGTAAAGCCTCCTGTGCTGTCATGGAACAACATCCTGTGGCCCAAACATCAG
Seq A exon
AGTGTTTATCTGGCCCAAGCTATCTGCGAATATTTTTCATCATATTCATAGTGACATTCTTGATTGGGTTGCTTAAAGTTCTTATCATTAGACAAGTGATACTACAGTGGAATAGTAATAAAATAAAGTCCTCATCAGATTACAGAGTGTCTGCTTCCAAAAAG
Seq C2 exon
GATAAACTGATTCTGCAAAGTGTTTGCACGAGAGCTGTAACCTACCGACGAGAAAAGCCTGAGGAAATAAAAATGGATATCAGCAAACTAAACGCCCAGGAGGCTTTCAGGTGCAACTTCTAAAGAACGATTAGCAAACGAGCAAAAACTGTTGGAAGCTGGATGTTTTTATACAATGTATTCTAGCAAATATGATATAAAAAGTCACAGGAGGAGACAAATTATTGAAGAGTGTGCCATGGAGACTGGCAGGTGTCTTCACAACTATGTGACTCACTCAGCTGCTGACATTTTCAGTGAACTATGTGTCTTACTACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006569-'26-24,'26-23,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGTGCCTTCACCCTCACA
R:
GCTTCCAACAGTTTTTGCTCGT
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]