BtaEX6026580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014389 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr4:30374420-30400544:+
Coord C1 exon
chr4:30374420-30374648
Coord A exon
chr4:30384611-30384810
Coord C2 exon
chr4:30400297-30400544
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGTTTTTGATAGAGG
3' ss Score
6.99
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTCAGCAGCAAGGACAAGATGGAGTGAAAGTCCAACAAGCTACCATAGCTCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCAACGATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGGCTTCTGATCAAGAAGTGCAGCCTGGCAAGAGGCTTCGAAGAGTTGCCTGTTCCTGTCCTAATTGTAGGGAAGGAGAAGGAAG
Seq A exon
AGGCAGTAATGAACCAGGAAAAAAGAAACAGCATATCTGTCATATTGAAGGATGTGGAAAAGTTTATGGCAAAACCTCTCACCTACGAGCACATCTTCGCTGGCATACTGGAGAAAGACCTTTTATATGCAACTGGATGTTTTGTGGCAAAAGATTCACAAGGAGTGATGAGCTTCAGAGACATAGAAGAACTCATACAG
Seq C2 exon
GTGAAAAGAGATTTGAATGTCCAGAATGTTCTAAAAGATTTATGCGGAGTGATCATCTCTCCAAACATGTCAAAACGCACCAGAATAAAAAAGGTGGTGGGACAGCTCTTGCCATTGTTACCTCCGGAGAACTGGACTCATCTGTTACAGAGGTGCTTGGCTCCCCAAGAATTGTCACAGTTGCAGCCATTTCTCAAGATTCAAACCCAGCAACTCCCAATGTTTCAACCAACATGGAAGAATTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014389-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.324 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
C2:
PF134651=zf-H2C2_2=PD(54.2=15.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCTGTTAGTCCTGACCA
R:
GGAGCCAAGCACCTCTGTAAC
Band lengths:
302-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]