GgaEX6019210 @ galGal4
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr2:30557833-30564128:+
Coord C1 exon
chr2:30557833-30558061
Coord A exon
chr2:30558282-30558481
Coord C2 exon
chr2:30559556-30564128
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTCATATTTGATCTTTTTAGAAG
3' ss Score
6.87
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTCAACAGCAAGGACAGGATGGAGTAAAAGTGCAGCAGGCTACCATAGCTCCTGTTACTGTAGCGGTAGGTGGCATTGCTAATGCAGGAATTGGTGCTGTTAGTCCTGATCAGATAACACAAGTGCAGCTGCAACAAGCTCAACAAGCTTCTGACCAGGAAGTGCAACCTGGCAAGAGAACAAGAAGAGTTGCCTGCTCGTGTCCTAATTGCAGAGAGGGAGAAGGAAG
Seq A exon
AAGCAGCAATGAACCAGGAAAAAAGAAGCAACATATCTGCCATATTGAAGGATGTGGTAAAGTTTATGGCAAGACATCTCATCTTCGGGCGCATCTGCGCTGGCATACTGGTGAAAGACCATTTATATGCAACTGGGTTTTTTGTGGCAAGCGATTTACAAGGAGTGATGAGTTGCAAAGACATAGAAGAACCCACACAG
Seq C2 exon
GTGAAAAGAGATTTGAGTGCCCAGAATGCTCTAAAAGGTTTATGCGAAGTGATCATCTATCGAAACATGTCAAAACTCATCAGAACAAGAAGGGTGGTGGAACAGCCCTTGCTATTGTTACCTCAGGAGAACTGGACTCTTCAGTTACTGAGGTTCTTGGTTCTCCAAGAATTGTCACTGTTGCTGCCATTTCTCAAGATTCAAACCCAGCAACCCCTAATGTTTCAACAAACATGGAAGAATTCTGAAAGGATAATTTATATGGACACCTAGTGCTGCACTTAAGTTTACATGCCTTTCAGGAAATGGAAGTGGGCTAGTAAAGTGGATTACAGAGAAGGAAATTGTGTTTTCAGTCTTGACTTCTGTAAGTGTTCCAGGTTGGAGGGTCAGCATGGAAAGTGTACACTGGTGCAACAAGGCAAAATTTCAAAAATACAAACAGCGCAAATTGATGTACTGGATAAACGGATGGGGGAATATTATTTCCATACTGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.324 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
C2:
PF134651=zf-H2C2_2=PD(54.2=15.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGACCAGGAAGTGCAA
R:
GGGGTTGCTGGGTTTGAATCT
Band lengths:
300-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]