MmuEX6083462 @ mm10
Exon Skipping
Gene
ENSMUSG00000025323 | Sp4
Description
trans-acting transcription factor 4 [Source:MGI Symbol;Acc:MGI:107595]
Coordinates
chr12:118234933-118261955:-
Coord C1 exon
chr12:118261727-118261955
Coord A exon
chr12:118254410-118254609
Coord C2 exon
chr12:118234933-118238394
Length
200 bp
Sequences
Splice sites
3' ss Seq
TATTGGTTTTGTTCTGTTAGGGG
3' ss Score
5.91
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTCAACAGCAAGGACAGGATGGAGTGAAAGTCCAACAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATTGCTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACCTCTGATGCAGAGGTGCAACCTGGCAAGAGGCTCCGAAGAGTTGCCTGCTCCTGTCCTAACTGTAGGGAAGGAGAAGGAAG
Seq A exon
GGGCAGCAGTGAACCAGGAAAGAAGAAGCAGCATGTTTGCCACATTGAAGGGTGTGGGAAAGTATATGGCAAGACCTCTCACCTCCGAGCACATCTCCGATGGCACACTGGAGAAAGACCGTTCATATGCAACTGGATGTTTTGTGGCAAAAGATTCACAAGGAGCGATGAGCTTCAGAGACACAGAAGGACCCACACAG
Seq C2 exon
GTGAAAAGAGATTTGAATGTCCAGAGTGTTCTAAAAGGTTTATGCGGAGTGATCACCTATCCAAGCATGTCAAAACTCACCAGAATAAGAAAGGAGGTGGGACAGCTCTTGCCATTGTTACCTCCGGAGAACTGGACTCATCTGTTACAGAGGTGCTTGGCTCTCCACGGATTGTCACGGTTGCCGCCATTTCCCAAGATTCGAATCCAGCAACTCCCAATGTTTCAACAAACATGGAAGAATTCTGAAACGTTATTTATAACAAAGACCTCTAGTGCTGCACTTAAGTTTACACACCTTTGAAAATCTGGAAATGGGCTGGTCAAGTGGATTACAGAGTAGGAAATCACGTTTGTATCCTTGGCATCTTTAAGTATTCCAGGGATTTTGGTTCAACACAGAAAGTGTTGAATTTTTTAAAAAATTGAAAAAGAAAACCAATATACTGGAAACAGAAAAGTATTTCTTCCATGGTATAAGTTGCTGTAGTTTTTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025323-'8-11,'8-8,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.309 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
C2:
PF134651=zf-H2C2_2=PD(54.2=15.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCTCCTGTAACGGTGGCA
R:
AGCTGTCCCACCTCCTTTCTT
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types