GgaEX6019210 @ galGal3
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
NA
Coordinates
chr2:30454981-30456919:+
Coord C1 exon
chr2:30454981-30455209
Coord A exon
chr2:30455430-30455629
Coord C2 exon
chr2:30456704-30456919
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTCATATTTGATCTTTTTAGAAG
3' ss Score
6.87
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTCAACAGCAAGGACAGGATGGAGTAAAAGTGCAGCAGGCTACCATAGCTCCTGTTACTGTAGCGGTAGGTGGCATTGCTAATGCAGGAATTGGTGCTGTTAGTCCTGATCAGATAACACAAGTGCAGCTGCAACAAGCTCAACAAGCTTCTGACCAGGAAGTGCAACCTGGCAAGAGAACAAGAAGAGTTGCCTGCTCGTGTCCTAATTGCAGAGAGGGAGAAGGAAG
Seq A exon
AAGCAGCAATGAACCAGGAAAAAAGAAGCAACATATCTGCCATATTGAAGGATGTGGTAAAGTTTATGGCAAGACATCTCATCTTCGGGCGCATCTGCGCTGGCATACTGGTGAAAGACCATTTATATGCAACTGGGTTTTTTGTGGCAAGCGATTTACAAGGAGTGATGAGTTGCAAAGACATAGAAGAACCCACACAG
Seq C2 exon
GTGAAAAGAGATTTGAGTGCCCAGAATGCTCTAAAAGGTTTATGCGAAGTGATCATCTATCGAAACATGTCAAAACTCATCAGAACAAGAAGGGTGGTGGAACAGCCCTTGCTATTGTTACCTCAGGAGAACTGGACTCTTCAGTTACTGAGGTTCTTGGTTCTCCAAGAATTGTCACTGTTGCTGCCATTTCTCAAGATTCAAACCCAGCAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.328 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=41.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCAGCAGGCTACCATAG
R:
GCTGTTCCACCACCCTTCTTG
Band lengths:
308-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]