RnoEX0084968 @ rn6
Exon Skipping
Gene
ENSRNOG00000005472 | Sp4
Description
Sp4 transcription factor [Source:RGD Symbol;Acc:3741]
Coordinates
chr6:146135877-146152968:-
Coord C1 exon
chr6:146152740-146152968
Coord A exon
chr6:146145845-146146044
Coord C2 exon
chr6:146135877-146137118
Length
200 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTTTTGTTCTGTTAGGGG
3' ss Score
6.67
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTCAGCAGCAAGGACAGGATGGAGTGAAAGTCCAGCAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATCGCTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACCTCTGATGCCGAGGTGCAACCTGGCAAGAGGCTTCGAAGAGTTGCCTGCTCGTGTCCTAACTGTAGGGAAGGAGAAGGAAG
Seq A exon
GGGCAGCAGTGAACCAGGAAAGAAAAAGCAGCATGTTTGCCACATTGAAGGGTGTGGGAAAGTGTATGGCAAGACTTCTCACCTACGAGCACATCTCCGCTGGCACACTGGAGAACGGCCTTTCATATGCAACTGGATGTTTTGTGGCAAAAGATTCACCAGGAGTGATGAGCTTCAGAGGCACAGAAGGACCCACACAG
Seq C2 exon
GTGAAAAGAGATTTGAATGTCCAGAATGTTCTAAAAGGTTTATGCGGAGTGATCACCTTTCCAAGCATGTCAAAACTCACCAGAATAAGAAAGGAGGTGGGACAGCTCTTGCCATTGTCACCTCCGGAGAACTGGACTCATCCGTTACAGAGGTGCTTGGCTCTCCACGGATTGTCACAGTTGCCGCCATTTCTCAAGATTCGAATCCAGCAACTCCCAATGTTTCAACAAACATGGAAGAATTCTGAAACGCTATTTATAACAAAGACCTCTAGTGCTGCACTAAGTTTACACCTTTGAAAATCTGGAAATGGGCTGGTCAAGTGAGTTACAGAGTAGGAAATCACGTTTGCATCCTTGGCATCTTTAAGTATTCCATGGATTATGGTTCAACACATAAAGTGTTGAATTTTTAAAAAATAGAAAAGGAAAACCAATATACTGGAAACAGAAAAGTATTTCTTCCATGGTATAAGTTGCTGTAGTTTTTTGGAAATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005472_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.309 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
C2:
PF134651=zf-H2C2_2=PD(54.2=15.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCTCCTGTAACGGTGGCA
R:
AGCTGTCCCACCTCCTTTCTT
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]