DreEX6071463 @ danRer10
Exon Skipping
Gene
ENSDARG00000005186 | sp4
Description
sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
Coordinates
chr19:2623925-2632440:+
Coord C1 exon
chr19:2623925-2624117
Coord A exon
chr19:2626677-2626876
Coord C2 exon
chr19:2629482-2632440
Length
200 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTTGTATTCTGACAGAAA
3' ss Score
8
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GTCAACAGCAGGGTCAGGATGGGGTCAAAGTTCAGTCCGCTCCAGTGACGGTGACCGTTGGGAACATCAGCAACGCTGTGAGTCCTGAGCAGATGGGGCAGGTCCAGAGCCCGTCCGATCAGGAGGGTCAACCCAGCAAGAGGCTGCGCAGGGTGGCCTGTTCCTGCCCCAACTGCAGAGATGGAGAGGGCAG
Seq A exon
AAACAACAGCGACCCGTCAAAGAAGAAGCAGCATGTGTGTCATATGGAGGGTTGTGGGAAGGTTTATGGGAAAACGTCTCACCTGAGGGCTCACCTGCGCTGGCACACAGGAGAACGACCATTCGTCTGTAACTGGATCTTCTGTGGGAAACGCTTCACGCGGAGCGACGAGCTGCAGCGGCACCGCAGAACACACACAG
Seq C2 exon
GTGAGAAGAGGTTCGAGTGTCCCGAATGCTCCAAGAGGTTCATGCGGAGCGACCACCTGTCAAAGCACATCAAAACCCACCAAAACAAGAAAGGTGGAGCAGCTCTTACCATCATCACCACAGACGAGATGGAGGAGGAGGTGGATGAGGTGTTGGGCTCGCCGAGGATCGTTACAGTGGCGACGCTCTCACATGATTCCAACCCGGCCACGCCCACCACTTCAAACAATTTAGAGGAGGAGTTTGAGTAGTTTTCCCTCCAAAAAAAAAAAAAAAAAAAAAGATTATTGGCTTAAAGCACCATGATATTGTTTGTTTGTTTATATATGTCGATTTTACGTTCTTCATTCTTTTTCTATCGACGATGGACCGCTGTTTGAGCGTACTCGATTAGTTTTTTTTCATATGGAAATTTAATACTATCAAATATTATGATAACAATCTAAAGGAAATATGGAAATAGTATGAGCTGTTAAGAGACGTAACATGAGCGATAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005186-'7-5,'7-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=0.338 C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
C2:
PF134651=zf-H2C2_2=PD(54.2=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACAGCAGGGTCAGGATG
R:
ATGGTAAGAGCTGCTCCACCT
Band lengths:
305-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]