BtaEX6026636 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30472970-30481808:+
Coord C1 exon
chr4:30472970-30473362
Coord A exon
chr4:30480366-30480698
Coord C2 exon
chr4:30481554-30481808
Length
333 bp
Sequences
Splice sites
3' ss Seq
TAATACTTGTCTGTTGGTAGGAA
3' ss Score
5.25
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
TACATTGGAAATCTTGAACTTCTTGTGCACGGATATAATAAGCTGAAACAGACTCTTCTGGAAGTTGAATACCCCCTGATTGAGGACGAGCTGAGGACGGTGGATGAGGAACTGCAGGCAGCCGCCACATCGCTGACATGGCAGGATGACTGCTGGGAGGATATCAAGAGGGTAAGGATGGCCACCTCAGAGCTGGAGCGCAGAGTGGAGCGTGCGCAGAATAACGTCAGAGTGATCCAGCAGACCCTGCGGGCTTGGGCCGAGTGCCCGCTCCTTCCCAGGAGAGAACACAGGCGGGAGACCACCATGACTTGGGAGGACAAGAGTGAATTATTTACGAAAAAATACAAGCGAATCCGGGAAGACGGCTGCAAGATACACAACTTGGTTGAG
Seq A exon
GAAAATAGGAAGCTATTCAGAGCCAATCCTGCTCTGGATGCCTGGAAGATTTATGTAGAATTCATTGATGACATCGTGGTGGAAGGCTTTTTTCAAGCAATAATGCATGACTTAGACTTCTTCCTGAAGAACACAGAGAAACAATTGAAACCTGCACCATTTTTTCAAGCACAGATGATCTTAATGCCCCCAGAGATTCTGTTTAAGCCTTCTTTAGAAAGAGAGGCTGGAGATGGCTTCTATGATCTGGTGGAAGAAATGCTGTGCAGTAGTTTCAGAATGTCTGCCCAGATGAAGCGAGTAGCAGCACATCTGGAAACAGAAAACTACCAG
Seq C2 exon
AGTGATGTGGACAACATGCTGGGCCTGGCAGAAGGTAGGCAGGAGATCATGAGGAGAGTAGCAGACGTTATCAGCAAAGTCTTGGACTTCAGAAACACCCTGGACACGTATGCTTACCTCTGGGTAGAAGACCGAGCCGAGTTCATGAAGCACTTCCTTCTATATGGCCCTACTGTGTCGGCTGAGGAGATGGAGCCTCATGTGAATGAAGAGGTCCCTGAACAATCACCAACACTTGAGCAGTTCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.153
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.5=42.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGTGATCCAGCAGACCC
R:
TCTCCTCAGCCGACACAGTAG
Band lengths:
357-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]