RnoEX6030062 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146041270-146045434:-
Coord C1 exon
chr6:146045042-146045434
Coord A exon
chr6:146041710-146042042
Coord C2 exon
chr6:146041270-146041521
Length
333 bp
Sequences
Splice sites
3' ss Seq
CAACCCTCTAATGTTCTTAGGAG
3' ss Score
5.66
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACATTGGGAATCTCGAGCTCCTGGTACAAGGATACAATAAGCTGAAACAGACCCTTCTGGAAGTTGAATACCCTCTCATTGAGAAAGAGCTTGGAGCCATTGATGAGCAGCTCAGGGTGGCTGCAACCTGGTTGACATGGCAAGATGACTTCTGGGTCTACATGGAGAAGGTGCAGGTGGCCACTGCCGAGCTAGAGCGCAGAGTGTCACAGACTCAGAGCAATGTGCAAACAATCCAGCAAACCATGCAGGCCTGGGCTGAGTGGCCACTGCTGCCCCGGAGGGAGACCAGAAGAGAGGCTGCCTTAACCTTGGATGACAAGGGGGATCTGTTTGCTAAGAAATACAAGCTGATCCGAGAAGATGGCTACAAGATACACAACCTGGTAGAG
Seq A exon
GAGAACCGGAAGCTCTTCAGAGCTGATCCTTCCCTGGATTCCTGGAAAATTTATGTGGAATTCATCGATGACATTGTGGTGGAAGGCTTTTTTCAGACCATCTTGCATGACCTGGACTTCTTCCTGAGGAACACAGAGAAACAGTTAAAACCCGCGCCATTTTTTCAAGCACAAATGCTCTTAATGCCCCCAGAGATTGTGTTCAAGCCCCCTTTAGAAAGAGAGGCTGGGGATGGCTTCTACAATCTGGTGGAGGCAATGTTGTGTGGCAGCTTCAAGGTGTCTGCCCAGATGGGGCGTGTGGCGGCACACCTGGACATCCCCGACTACCAG
Seq C2 exon
AATGATATGGATAACATGTTAGGCCTGGCAGAGGTCCGGCAGGAGATAATGAATAGAGTTGCTGATGTCATCGACAAAGTTTTGGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTGTGGGTAGATGACCGAGTAGAGATTCTGAGGCAGTTCCTCCTGTATGGCCATGCTGTACCATCTGAGGAAATCGATGCTCCTGCAGGCGAGGACATCCTGCAGTCACCAACACTAGAACAGTTCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.5=42.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGAGCCATTGATGAGC
R:
TTATCTCCTGCCGGACCTCTG
Band lengths:
354-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]