MmuEX6083407 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118127010-118131111:-
Coord C1 exon
chr12:118130719-118131111
Coord A exon
chr12:118127450-118127782
Coord C2 exon
chr12:118127010-118127261
Length
333 bp
Sequences
Splice sites
3' ss Seq
CTCTATTGCTTTGTGTTTAGGAG
3' ss Score
7.26
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TACATTGGGAATCTTGAGCTCCTTGTACAAGGCTACAATAAGCTGAAACAGACCCTTCTGGAAGTGGAATACCCTCTCATTGAGGATGAGCTTGGAGCCATTGATGAGCAGCTCAGGGTGGCTGCAACCTGGCTGACATGGCAAGATGACTTCTGGGTCTACATGGAGAGGGTGCAGGTGGCCACTGCTGAGCTAGAGTGCAGAGTGTCACAGACTCAGAGCAACATGCTAACAATCCAGCAAACCATGCAGGCCTGGGCTGAGTGGCCACTGCTGCCCCGGAGGGAGACCAGAAGAGAGGCTGCCTTGACCTTGGACGACAAGGGGGATCTGTTTGCAAAAAAGTACAAGCTGATCCGAGAAGATGGTTGCAAGATACACAACTTGGTAGAG
Seq A exon
GAGAACCGGAAGCTCTTCAGAGCTGATCCTTCCCTGGATTCCTGGAAAATTTATGTGGAATTCATTGATGACATTGTGGTGGAAGGCTTTTTTCAGGCCATCTTGCATGACCTGGACTTCTTCCTGAGGAACACAGAGAAACAGTTAAAACCCACACCATTTTTTCAAGCACAAATGCTCTTAATGCCCCCAGAGATTGTGTTCAAGCCTCCTTTAGAAAAAGAGGCTGGGGATGGCTTCTACGATCTGGTGGAGGAAATGTTGTGTGGCAGCTTCAGAGTGTCTGCCCAGATGGGGCGCGTGGCAGCACACCTGGACATCGCAGACTACCAG
Seq C2 exon
AACGATATGGATAACATGTTAGGCCTGGCGGAGGTCCGGCAGGAGATCATGAATAGAGTTGCTGATGTCATCAACAAAGTCTTAGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTCTGGGTGGATGACCGGGTAGAGATTCTAAGGCAGTTTCTCCTGTACGGCCATGCTGTGCCATCTGAGGAAATGGATGCTCCTGCAAGTGAAGACATCCTGCAACCACCAACACTAGAACAATTCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.5=42.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGCTAGAGTGCAGAGT
R:
ATCTCTACCCGGTCATCCACC
Band lengths:
351-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types