HsaEX6007416 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21591185-21600930:+
Coord C1 exon
chr7:21591185-21591577
Coord A exon
chr7:21599787-21600119
Coord C2 exon
chr7:21600676-21600930
Length
333 bp
Sequences
Splice sites
3' ss Seq
TAATACTTGTCTGTTTCTAGGAA
3' ss Score
9.54
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TACATTGGAAATCTTGACCTTCTTGTGCAAGGGTATAATAAACTCAAACAGACGCTCCTGGAAGTTGAATACCCTCTGATTGAAGATGAGCTGAGGGCTATTGACGAGCAGCTGACAGCAGCCACAACGTGGCTGACATGGCAGGATGACTGCTGGGGCTACATCGAGAGGGTGAGGGCAGCCACGTCCGAGTTGGAGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATCCAGCAGACCATGAGGGGCTGGGCCAGGTGCGTGCTACCTCCCAGGAGAGAGCACAGACGAGAGGCAGCCTTCACCTTGGAGGACAAGGGTGATTTGTTTACAAAAAAATACAAGTTAATCCAAGGAGATGGCTGCAAGATCCACAACTTGGTCGAG
Seq A exon
GAAAATAGGAAGCTCTTCAAAGCCAATCCCTCTCTGGATACCTGGAAAATTTATGTAGAATTCATTGACGACATTGTGGTGGAAGGCTTTTTTCAGGCTATAATGCACGACTTAGACTTCTTTCTGAAGAATACAGAGAAACAATTGAAACCGGCACCGTTTTTTCAAGCACAAATGATCTTGTTGCCTCCTGAGATTGTGTTTAAACCTTCCCTAGACAGAGAGGCTGGGGATGGCTTCTATGATCTTGTAGAAGAAATGTTATGCAATAGTTTTAGAATGTCTGCCCAGATGAACCGAATAGCAACACACCTGGAAATTAAAAATTATCAG
Seq C2 exon
AATGATATGGATAACATGTTAGGCCTGGCAGAGGTCAGGCAGGAGATCATGAACAGAGTGGTGAATGTCATCAACAAAGTCTTAGATTTCAGAAACACCCTGGAGACCCACACTTACCTCTGGGTGGATGATCGAGCTGAGTTTATGAAGCATTTTCTCTTGTATGGCCATGCTGTGTCTTCCGATGAAATGGATGCTCATGCAAATGAAGAAATTCCCGAACAACCACCAACTCTTGAGCAATTCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'30-29,'30-27,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.5=42.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCCCAGGAGAGAGCAC
R:
GAGTTGGTGGTTGTTCGGGAA
Band lengths:
358-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains