BtaEX6026752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33697040-33715007:+
Coord C1 exon
chr4:33697040-33697128
Coord A exon
chr4:33713264-33713444
Coord C2 exon
chr4:33714879-33715007
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTCTTTTGCAGACA
3' ss Score
13.65
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
AAGAAGGATCCAGCGAGTGTATGGAGCGCCCTCCCTGTACCTCAAAAGACTATTTCCAGATCCACACTCCATGTGATGAGGAAGGAAAG
Seq A exon
ACACAGATAATGTACAAGTGGATAGAGCCCAAAATCTGCCGAGAGGATCTCACGGATGCTATTAGGTTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCACCTTGCAACCCTGGGTTTTATAACAATGGATCATCTTCCTGCCATCCCTGCCCTCCTGGAACATTTTCGGATGGAACAAAGG
Seq C2 exon
AATGTAGATCATGTCCAGCAGGAACGGAGCCTGCACTTGGGTTTGAATATAAATGGTGGAATGTACTTCCTGGCAACATGAAAACCTCCTGTTTCAATGTTGGGAATTCAAAGTGTGACGGAATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'16-14,'16-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PD(19.0=26.7)
A:
PF076998=GCC2_GCC3=PU(65.7=37.7)
C2:
PF076998=GCC2_GCC3=PD(31.4=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGATCCAGCGAGTGTA
R:
CATTCATTCCGTCACACTTTGA
Band lengths:
218-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]