RnoEX0072816 @ rn6
Exon Skipping
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21626696-21636886:-
Coord C1 exon
chr4:21636288-21636886
Coord A exon
chr4:21627390-21627570
Coord C2 exon
chr4:21626696-21626824
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTATTTATTTTTTCCCCAGACA
3' ss Score
9.27
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
TAGTGTTTAACTCGGCCTGTGTTGCTCAAACTCTCTTCCCGGCATGAGCACACCCTGCTTTGTAACTGGTGTGTGCAGACAGTACAGAGGAAATCTAAGAGTTTAGGTGCTACATACTGCCTTTGCTTTTACCTCAGAATTAGTTCTCTGGACATTGTATGTAATCTTTATGGTATTTTGGTAAAACTTCTCTGAGAGGGTTTTAGTTTCATAAAAACATCTCACATTTGCCCCCATTTTTCATCTTTAAAACAGGTTGATAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGACCCAAAAAAAAAAAAAAAAAAAACAAAAAACCAAAACAGGTTGATATTACTCTCTACCTCATGAAACTTCTTTGGGAAGACCTAAGATACTCAAAGTAAGGTTTCTAGCTGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
ACACAGATAATGTACAAGTGGATAGAGCCGAAAATCTGCAGGGAAGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCCCCTTGCAACCCAGGATTCTATAACAATGGCTCTTCTTCTTGCCATCCCTGCCCTCCCGGGACGTTTTCGGATGGCACAAAGG
Seq C2 exon
AATGCAAGTCGTGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATGTCCTTCCCACCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-'13-13,'13-12,14-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(65.7=37.7)
C2:
PF076998=GCC2_GCC3=PD(31.4=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTAGGAAGCGCAAGG
R:
ATTCAAACCCAAGTGCTGGCT
Band lengths:
255-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]