HsaEX6008779 @ hg38
Exon Skipping
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr7:86925528-86938214:-
Coord C1 exon
chr7:86938126-86938214
Coord A exon
chr7:86926736-86926916
Coord C2 exon
chr7:86925528-86925656
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGTAGACA
3' ss Score
10.48
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGGAAGGATCCAGTGAGTGTACAGAGCGCCCTCCCTGTACCACAAAAGACTATTTCCAGATCCATACTCCATGTGATGAAGAAGGAAAG
Seq A exon
ACACAGATAATGTACAAGTGGATAGAGCCCAAAATCTGCCGGGAGGATCTCACAGATGCTATTAGATTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCGCCTTGCAACCCTGGATTTTATAACAATGGATCATCTTCTTGCCATCCCTGTCCTCCTGGAACATTTTCAGATGGAACCAAAG
Seq C2 exon
AATGTAGACCATGTCCAGCAGGAACGGAGCCTGCACTTGGCTTTGAATATAAATGGTGGAATGTCCTTCCTGGCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCAAAGTGCGATGGAATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-'18-19,'18-18,23-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(67.6=37.7)
C2:
PF076998=GCC2_GCC3=PD(29.4=22.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGATCCAGTGAGTGTACA
R:
TCCATCGCACTTTGAATTCCCA
Band lengths:
210-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains