MmuEX6015882 @ mm10
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9410584-9480717:+
Coord C1 exon
chr5:9410584-9410731
Coord A exon
chr5:9427690-9427870
Coord C2 exon
chr5:9479196-9480717
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTATTTTTTTCTCAGACA
3' ss Score
8.76
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
CTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTT
Seq A exon
ACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGG
Seq C2 exon
GAAAAAGATGACCACTTTGAGTCTGTTCAGCTGAAATCCTCAAGATGCCCCAATATATGAAGAGACAATGCTGTAGCATTCAGGACCCCCATTAGGACTTGTCCTCACATCTGACATGGCTGTGATCTCACAAAGGAGGTGTGCCAATGAGAGGAGGAGGCAAAAATGCTGATTGCCTTATAACATGTCACATACTTTGTCAAACTACAGAAGACAGATGATGTGGGTCTCACTGAAGATGAAGCTTAACTCAGGAAGAGATTTAGCTGTATATACACATAACTGAAACCCAAGTTTAAGCCCACCAATGCACTGCTGAGCATGCCATATGATTACTGGGTAACTTTAATTCTTTATACTGTCTACATACAAAATATGTGTTGGAAGGCAGACATAAACATATGCCTTGTGTTTCCACGTATGTCTTGTTCTTGTACTTTGGGAGAAGATTTGGAAAAAAAATTAAGTTATAATTATTTTTACTTTTCTTTCTCCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004_MULTIEX2-5/17=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(65.7=37.7)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTGATGACTGCACTGTG
R:
TTGGCACACCTCCTTTGTGAG
Band lengths:
258-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types