GgaEX6000359 @ galGal4
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7491583-7495732:+
Coord C1 exon
chr1:7491583-7491671
Coord A exon
chr1:7494522-7494702
Coord C2 exon
chr1:7495604-7495732
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCAGTGTCTTCTCATTCCAGACT
3' ss Score
7.85
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
AAGAGGGATCCAGTGCGTGTATAGAGCGTCCTCCATGCACAAGCAAAGACTTTTTCCAGATCCACACCCCGTGCGATAAGGAAGGAAAA
Seq A exon
ACTCAGATCATGTACAAATGGATCGAACCCAAGATCTGCAGAGAGGATCTCCCTGATGCATTGACCCTACCTCCTTCTGGAGAGAGGAAGGAATGTCCACCCTGCAATCCTGGCTTTTACAGCAATGCCTCATCCTCCTGTACTCCCTGCCCACAGGGCATGTTTTCAGATGGGACACAGG
Seq C2 exon
AGTGCAAAGCCTGCCCTGCAGGGACTGAACCCGCTCTTGGCTTTGAGTACAAGTGGTGGAACATCTTACCAAGCAACATGAAGACTTCTTGCTTTAATGTTGGCAACTCTAAGTGCGATGGGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'11-13,'11-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(65.7=37.7)
C2:
PF076998=GCC2_GCC3=PD(31.4=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGGATCCAGTGCGTGTA
R:
CATTCATCCCATCGCACTTAGAGT
Band lengths:
218-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]