MmuEX6015882 @ mm9
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9422302-9428533:+
Coord C1 exon
chr5:9422302-9422390
Coord A exon
chr5:9427690-9427870
Coord C2 exon
chr5:9428405-9428533
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTATTTTTTTCTCAGACA
3' ss Score
8.76
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
AGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAG
Seq A exon
ACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGG
Seq C2 exon
AATGCAAGTCATGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATGTCCTCCCTGCCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGAATGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(65.7=37.7)
C2:
PF076998=GCC2_GCC3=PD(31.4=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGGAGCCAGTGAGTGTG
R:
CGTTCATTCCATCGCACTTGG
Band lengths:
218-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: