BtaEX6026844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017664 | HGF
Description
Bos taurus hepatocyte growth factor (hepapoietin A; scatter factor) (HGF), mRNA. [Source:RefSeq mRNA;Acc:NM_001031751]
Coordinates
chr4:39183655-39189032:+
Coord C1 exon
chr4:39183655-39183788
Coord A exon
chr4:39187718-39187756
Coord C2 exon
chr4:39188936-39189032
Length
39 bp
Sequences
Splice sites
3' ss Seq
GTATATATTTGTTTTTACAGGTG
3' ss Score
10.17
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GCATATCTTCTGGGAACCAGATGCTACTAAGCTGAATAAGAATTACTGTCGGAATCCTGATGACGATGCCCACGGTCCCTGGTGTTACACAGGGAATCCTCTCATTCCTTGGGATTATTGCCCTATTTCTCGTT
Seq A exon
GTGAGGGCGATACCACACCTACAATAGTCAATTTAGACC
Seq C2 exon
ATCCAGTAATATCTTGCGCCAAAACAAAACAATTGCGAGTTGTAAATGGAATTCCAACACGAACAAATGTAGGATGGATGGTTAGTTTGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017664-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(57.0=100)
A:
PF0005113=Kringle=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PU(8.5=57.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCCTGATGACGATGCCC
R:
CGCAATTGTTTTGTTTTGGCGC
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]