DreEX0037448 @ danRer10
Exon Skipping
Gene
ENSDARG00000045544 | hgfa
Description
hepatocyte growth factor a [Source:ZFIN;Acc:ZDB-GENE-041014-2]
Coordinates
chr4:19730495-19733102:-
Coord C1 exon
chr4:19732966-19733102
Coord A exon
chr4:19730731-19730763
Coord C2 exon
chr4:19730495-19730603
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTTATAATTCAGGTA
3' ss Score
9.55
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GAGAGACACCCGGTCAGCGAAGGCCAGCGCGGGTTTAGAGTTGAACTTGTGCAGGAATCCAGACAGAGATAAGCACGGGCCGTGGTGCTACACGTCCAACTCCTCCATTCCCTGGGACTACTGCGGACTGGAGCGCT
Seq A exon
GTAAATCAATGTCATCGGATGACCATCAAATGA
Seq C2 exon
GTGGAGGACCAAAACCATCTTGCTTTATACATAAAACCACACGGATTGTTGGGGGAATGCGAGTGCAGCGGGCAGAGGATGGAAGTTGGGTGGTCAGCATTCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045544_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(59.7=100)
A:
PF0005113=Kringle=PD(0.1=0.0)
C2:
PF0005113=Kringle=PD(0.1=0.0),PF0008921=Trypsin=PU(9.5=56.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCTACACGTCCAACTC
R:
ACTCGCATTCCCCCAACAATC
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]