MmuEX6015991 @ mm10
Exon Skipping
Gene
ENSMUSG00000028864 | Hgf
Description
hepatocyte growth factor [Source:MGI Symbol;Acc:MGI:96079]
Coordinates
chr5:16604788-16611916:+
Coord C1 exon
chr5:16604788-16604921
Coord A exon
chr5:16610106-16610144
Coord C2 exon
chr5:16611820-16611916
Length
39 bp
Sequences
Splice sites
3' ss Seq
CATAATATTTGTTTCTACAGGTG
3' ss Score
10.12
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
TCATATCTTCTGGGAGCCAGATGCTAGCAAATTGAATAAGAATTACTGCCGGAATCCTGATGATGATGCCCATGGACCTTGGTGCTACACGGGGAATCCTCTTATTCCTTGGGATTATTGCCCTATTTCCCGTT
Seq A exon
GTGAAGGAGATACTACACCTACAATTGTCAATTTGGACC
Seq C2 exon
ATCCTGTAATATCCTGTGCCAAAACAAAACAACTGCGGGTTGTAAATGGCATTCCAACACAAACAACAGTAGGGTGGATGGTTAGTTTGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028864-'18-26,'18-24,21-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(57.0=100)
A:
PF0005113=Kringle=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PU(8.5=57.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCCTGCTTGATCTTTT
R:
TGTCTTGCAGTAAGAACCCAACT
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types