GgaEX6000429 @ galGal4
Exon Skipping
Gene
ENSGALG00000008461 | HGF/SF
Description
hepatocyte growth factor precursor [Source:RefSeq peptide;Acc:NP_001025541]
Coordinates
chr1:10516786-10519546:+
Coord C1 exon
chr1:10516786-10516925
Coord A exon
chr1:10518944-10518982
Coord C2 exon
chr1:10519450-10519546
Length
39 bp
Sequences
Splice sites
3' ss Seq
TATCTTATTTGTCTGTCTAGGTA
3' ss Score
9.73
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GCATATACAAATATTCAGAGAACCAGATGTTAGTAAACTGAAGAAAAACTACTGCCGCAATCCAGATGATGATTTTCATGGTCCCTGGTGTTACACAGATGATCCTCTCATTCCCTGGGATTACTGCCCTATTTCTCGAT
Seq A exon
GTACTGGTGACACAACTCCTACTACAACAAGTTTGGATG
Seq C2 exon
ATACTGTCATTCCTTGTGCTTCAACAAAACATTTGAGAGTTGTAAATGGAATCCCAACACAAACTAACGAAGGATGGGTGGTTAGTTTGACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461-'16-24,'16-22,17-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(58.0=100)
A:
PF0005113=Kringle=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PU(8.5=57.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTGGGATTACTGCCCT
R:
ACCACCCATCCTTCGTTAGTT
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]